PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1641_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 278aa MW: 31236 Da PI: 7.8158

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1641_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.9e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l +++++G+g +W + + + g++R++k+c++rw++yl RrC1641_p1 14 RGPWSPEEDSKLRGYIEKYGNGgNWISLPLKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-22	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.079	9	66	IPR017930	Myb domain
SMART	SM00717	6.5E-10	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-14	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.98E-19	15	90	IPR009057	Homeodomain-like
CDD	cd00167	4.83E-8	16	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-6	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRAPCCDKT KVKRGPWSPE EDSKLRGYIE KYGNGGNWIS LPLKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSEEEDRIIL SLFAAIGSRF PNLSLKTTIT LSSYTPYVEN PTRSLINING 120 FEADDQQIFP FINPNYPHDF SLADMCSNND NNIFGTSGFL LNHNICDHFS NHNSLSSEVN 180 GKRSEIIMKQ EEMMMIDHHI GQMTKGYNGD FTQGYYNNYI NGHGDLKQMI SGSGTNSNIN 240 MGGSGSRSAS SSSFISDLAE NKTSSSFLQH KCLPYFYS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269\|PubMed:16461581, ECO:0000269\|PubMed:16473968}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175507	2e-90	AK175507.1 Arabidopsis thaliana mRNA for myb like transcription factor (MYB37), complete cds, clone: RAFL21-93-G12.
GenBank	AY519628	2e-90	AY519628.1 Arabidopsis thaliana MYB transcription factor (At5g23000) mRNA, complete cds.
GenBank	DQ446976	2e-90	DQ446976.1 Arabidopsis thaliana clone pENTR221-At5g23000 myb family transcription factor (At5g23000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445032.1	1e-178	PREDICTED: transcription factor RAX1-like
Swissprot	Q9FG68	1e-121	RAX1_ARATH; Transcription factor RAX1
TrEMBL	A0A078IK16	1e-151	A0A078IK16_BRANA; BnaA10g13590D protein
TrEMBL	A0A397XKI4	1e-151	A0A397XKI4_BRACM; Uncharacterized protein
TrEMBL	M4CE17	1e-151	M4CE17_BRARP; Uncharacterized protein
STRING	Bra002448.1-P	1e-152	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14013	16	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23000.1	1e-120	myb domain protein 37

Publications ? help Back to Top
Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana. Front Plant Sci, 2013. 4: p. 416 [PMID:24204368] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu YT, et al. Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana. Plant Mol. Biol., 2016. 90(3): p. 267-79 [PMID:26646286]