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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RrC1635_p1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 646aa MW: 70857.9 Da PI: 6.517 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.5 | 1.5e-28 | 238 | 291 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
RrC1635_p1 238 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 291
79*******************.********************************7 PP
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| 2 | Response_reg | 73.7 | 7e-25 | 39 | 147 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ + +l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ + Ga
RrC1635_p1 39 VLVVDDDPTCLVILEKMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAV 133
89*********************.***************888889**********************6644.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
RrC1635_p1 134 DYLIKPVRMEALKN 147
*********99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 8.1E-185 | 18 | 638 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 3.56E-35 | 35 | 164 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 6.8E-41 | 36 | 180 | No hit | No description |
| SMART | SM00448 | 4.5E-30 | 37 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.45 | 38 | 153 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 3.6E-22 | 39 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.25E-27 | 40 | 152 | No hit | No description |
| PROSITE profile | PS51294 | 11.54 | 235 | 294 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.52E-19 | 236 | 295 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 8.5E-30 | 237 | 296 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.1E-24 | 238 | 291 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.2E-8 | 240 | 290 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 646 aa Download sequence Send to blast |
MMMNPLNGRG GGGGLGGSSS GKNQGGESVV EMFPSGLRVL VVDDDPTCLV ILEKMLRTCL 60 YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS 120 KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRIEW SLPTTTHSGS VEETTGERQQ 180 QQREAVSADD DDNNSSSVNE GNNNNNNWRS SSGSSSRKRK DEEGEEQGDE EDASNLKKPR 240 VVWSVELHQQ FVAAVNQLGV EKAVPKKILE LMNVPGLTRE NVASHLQKYR IYLRRLGGVS 300 QHHQGSLNNS FMTGQDASFG SLPTLNGFDL QALGQLPAQS LAQLQASGLT RPAALVSKPG 360 FPGGSTTIVD ERSIFSFDNS KMNLLHGVPT GMEPRQLAGL QQQHGMTIQQ QIAAVRAGHS 420 LRRPQQQTFS RPQQSSSIRQ PMLPNRVSEI SGFSSGRSSS IPESSSRVLP TSYANLSTQQ 480 QSLAFSNFQQ ELPVNSFPLA SAPGLLSLRK PHSSSSEVNS SEAGFTTSSY DMLFSSRPND 540 WDLRSMLSSS HQDAFSNSEA YSSSRNNNNT SRNQQQQQQQ QGMVSHHQVY GNGGGSSLKV 600 KSETMAFHEQ YSNQEDLMSA LLKQEGIGPV DTEFDFDAYS IDDIPV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-22 | 237 | 296 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK353418 | 1e-158 | AK353418.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-42-G14. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018493413.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A398A1K8 | 0.0 | A0A398A1K8_BRACM; Two-component response regulator | ||||
| STRING | Bra001643.1-P | 0.0 | (Brassica rapa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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