PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1612_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 560aa    MW: 62840.3 Da    PI: 6.9707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1612_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix445.9e-145533787
    trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                k+ e g++rs+k+Ckek+en++k+yk++ke++++r   + +t+++f+qlea
  RrC1612_p1  5 KLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGR--HDGKTYKFFSQLEA 53
                77899****************************98..45567*******85 PP
2trihelix103.71.3e-32329413186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k e+laLi++r+ me r++++  k+ lWee+++ m++ g++r++k+Ckekwen+nk+ykk+ke++k+r +++ +tcpyf++l+
  RrC1612_p1 329 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEIASSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKER-PQDAKTCPYFHRLD 413
                 8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-9454No hitNo description
SuperFamilySSF1014475.75E-5264269No hitNo description
PROSITE profilePS500907.062322386IPR017877Myb-like domain
SMARTSM007170.0018326388IPR001005SANT/Myb domain
PfamPF138375.0E-22328413No hitNo description
Gene3DG3DSA:1.10.10.604.7E-4328385IPR009057Homeodomain-like
CDDcd122032.99E-30329393No hitNo description
SuperFamilySSF1014475.75E-5357370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGNRKLLELG YKRSAKKCKE KFENVQKYYK RTKETRGGRH DGKTYKFFSQ LEALNTTPPP  60
SSSLDATPLS VANPIQPPPS SSPFPVFPPL PQTQPHSGVS FTPNAAPPPA PPPAPMGPTF  120
PGATFSSHSS STASGMGSDD EEEDIMDVDQ AGPSSRKRKR GNRGRRGGKM MELFEGLVRQ  180
VMQKQAAMQR SFLEALEKRE QERLHREEAW KRQEMSRLAR EHEIMSQERA ASASRDAAII  240
SLIQKITGHT IQLPPSLSSQ PSPPPPPPPA AKRPSSQPQL QPIMAIPQQQ VLPPPPPPPP  300
HHHQLDQQQQ QQPQQEIMST DQSSPSSSRW PKAEILALIN LRSGMEPRYQ DNVPKGLLWE  360
EIASSMKRMG YNRNAKRCKE KWENINKYYK KVKESNKERP QDAKTCPYFH RLDLLYRNKV  420
LGTGGSSSAS GLPQDQISTV QKQSPVSAVK PPQGAVGSAS SEEEDTREES PQGTEKPEDL  480
VMKELMQRQQ QQQQDSMISE YEKIEESHNY NNMEEEEEEE EMDEELDEDE KSAAYEVAFQ  540
SPANRGGNGH TEPPFLTMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11119KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210451e-138AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270351e-138AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032151e-138AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026841e-138CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438652.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
SwissprotQ9C8821e-168GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGBra040010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-109GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]