PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15989_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 315aa    MW: 34780.3 Da    PI: 5.4925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15989_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.5e-12137179248
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                  +  GVr +  +g+W+AeIr p     + ++++lg++ t eeA ka+  
  RrC15989_p2 137 KPVGVRLRQ-SGKWAAEIRNPI----TkTKVWLGTYATLEEAEKAYAD 179
                  678***999.7*********72....36*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.552137196IPR001471AP2/ERF domain
PfamPF008471.7E-7137177IPR001471AP2/ERF domain
SMARTSM003808.5E-9137197IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-12139184IPR016177DNA-binding domain
CDDcd000183.45E-15139177No hitNo description
Gene3DG3DSA:3.30.730.105.0E-15140183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSAVSESALI LSLFHVSSPT RSSSSTSSAL FFGLTTVLNS LRFCTKQRLV LEVPSLSMGD  60
SQETKVTLFH NMKKQVRGRK VRIVVSDPYA TDESSSDEWF ECKPTKVKRI VHEINLPFQL  120
SDGVKNSRRR ACRQLNKPVG VRLRQSGKWA AEIRNPITKT KVWLGTYATL EEAEKAYADK  180
KVEFDASVNS QCLRSAASKE KMSPSKDVTA CGDLAKEGFD LSGLEIPDLS FLGAEEKCKV  240
SGVNAAGEID LDYFFKEEDY GHLFDDFSAL DNVNNIGLAS ELPDCDFTDV ELEHGDSKFA  300
FADQVAPPPL NISCP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479288.11e-168PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_018479293.11e-168PREDICTED: ethylene-responsive transcription factor ERF116
SwissprotQ8GW175e-58EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLA0A3P5YGA11e-171A0A3P5YGA1_BRACM; Uncharacterized protein
STRINGBra024743.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.23e-60ERF family protein