PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15657_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 304aa MW: 33477.9 Da PI: 10.4007 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 226 | 283 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +d +++++tYegeH+h+ RrC15657_p2 226 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDSTMLIVTYEGEHRHN 283 9************************8766****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.9E-17 | 174 | 222 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 212 | 284 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.976 | 219 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 222 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 224 | 284 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 226 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MDHLIRVLSN RSDKHNNNLD CSEITDYTVS KFKTVISLLN RTGHARFRRG PVHSTPSPQK 60 QQQSQIVKIA QTEAPIVSQP TRPTAVAATP SRMIVHSNQP SLTLDFTKPT IFGSKSSEIE 120 FSKENFSVSL SSSCMSSGIT GDGSVSKGSS IFLTSAQQPV TSSGKPPLAG QPYRKRCLEH 180 EHSLSEGFSG KISGSPCPCK KRRKNRMKRT VRVPAISSKI ADIPPDEYSW RKYGQKPIKG 240 SPHPRGYYKC STFRGCPARK HVERALDDST MLIVTYEGEH RHNQSAMQEN VSSSGVTDLV 300 FASA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 212 | 283 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 203 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430033 | 0.0 | KF430033.1 Brassica rapa WRKY transcription factor 11 (WRKY11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447212.1 | 0.0 | PREDICTED: probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-161 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | M4D182 | 0.0 | M4D182_BRARP; Uncharacterized protein | ||||
TrEMBL | V5RG46 | 0.0 | V5RG46_BRACM; WRKY transcription factor 11 | ||||
STRING | Bra010231.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-149 | WRKY DNA-binding protein 11 |