PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1549_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 33296.4 Da PI: 8.2936 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.5 | 1.2e-27 | 102 | 162 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqKe++gs +pr+Y+rCt + +C + k+v+rs++dp+++e++Y g+H+++ RrC1549_p1 102 DDGYCWRKYGQKEIHGSSNPRGYFRCTNRstqKCLAVKQVQRSDKDPSTFEVKYVGNHTCN 162 8**************************988889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-24 | 98 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-23 | 99 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-34 | 101 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.517 | 101 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-23 | 102 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MAMEEKIVIN ELEQGRELTK RLINNLKHTS SIESSKVMIS EILRIYQNAI LMLSFKEDDK 60 NIIKRSREIE DKGSKNVSKK RKVSDKKTEE IKVFVGTGQE IDDGYCWRKY GQKEIHGSSN 120 PRGYFRCTNR STQKCLAVKQ VQRSDKDPST FEVKYVGNHT CNNNNNSTSP KKTAASFSVS 180 MFEEGSRVGL REQREDTKKP KKTEQVMISL EDVENKKDIF RTYSFSNHEI ENVGGWKSNI 240 FQENLSPAAT TTSGSGMTSE IVTAPATVED WGTVDSYFSS LDNIIDLGQD LWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 99 | 161 | 6 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of osmotic stress responses and stomatal movement (PubMed:24773321). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). Together with WRKY70 and WRKY53, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). Together with WRKY54 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). {ECO:0000250, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321, ECO:0000269|PubMed:28576847}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and hydrogen peroxide treatments (PubMed:24773321). Induced by salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Up-regulated by E.amylovora (PubMed:22316300). Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:22325892, ECO:0000269|PubMed:24773321}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461921.1 | 0.0 | PREDICTED: probable WRKY transcription factor 46 | ||||
Swissprot | Q9SKD9 | 1e-139 | WRK46_ARATH; Probable WRKY transcription factor 46 | ||||
TrEMBL | V5RH16 | 1e-174 | V5RH16_BRACM; WRKY transcription factor 46 | ||||
STRING | Bra000423.1-P | 1e-173 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-132 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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