PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1546_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 300aa MW: 33273.4 Da PI: 7.2033

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1546_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.5	2.3e-27	164	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs++pr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ RrC1546_p2 164 DDNHTWRKYGQKEILGSTYPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 224 8**************************999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-27	157	224	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-25	161	225	IPR003657	WRKY domain
SMART	SM00774	1.6E-35	163	225	IPR003657	WRKY domain
PROSITE profile	PS50811	20.472	164	226	IPR003657	WRKY domain
Pfam	PF03106	5.2E-25	164	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEEVMSIIFH GLKLVDELKS SLPEKSPEAL STSLDEITKT FCDAKERLKI VLVIRNSETA 60 MNQLKPAIAA CSDQMLMQIE PGLMQEYWLR YGGSTSSQGT EAVTQRQLMA VKGDGGRNLM 120 ATERSGGSGS GSSTPRQRRR KNEGEEQTVL VAALRSGNTD LPPDDNHTWR KYGQKEILGS 180 TYPRAYYRCT HQKLYNCPAK KQVQRLNDDP FTFRVTYRGS HTCHIYSTAP TISTAAPTAP 240 IATTATTSHP VDYGPFFDMA EAMMFGSSGS GANMDFIFPC NDPPPHNHFY RRPEDGDGDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-20	164	223	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00304	DAP	Transfer from AT2G40740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133452.1	0.0	PREDICTED: WRKY transcription factor 55-like
Refseq	XP_013740576.1	0.0	WRKY transcription factor 55
Swissprot	Q9SHB5	1e-156	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	A0A397ZZZ3	0.0	A0A397ZZZ3_BRACM; Uncharacterized protein
STRING	Bra000202.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-143	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]