PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1534_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 234aa    MW: 25683.3 Da    PI: 4.4756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1534_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-193383155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  RrC1534_p2 33 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 83
                79*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-133383IPR001471AP2/ERF domain
CDDcd000184.28E-233393No hitNo description
PROSITE profilePS5103223.2483491IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-223492IPR016177DNA-binding domain
SMARTSM003801.6E-353497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-323592IPR001471AP2/ERF domain
PRINTSPR003677.8E-113546IPR001471AP2/ERF domain
PRINTSPR003677.8E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTELYISSVK QPSPVEDEET HRTNSKKRIR PDPGYRGVRM RTWGKWVSEI REPRKKSRIW  60
LGTFSTAEMA ARAHDAAALT IKGASAVLNF PELATFLPRP ASSSPRDVQA AAAVAAAMDF  120
SSSSSVATSD PTTVVPETQL SSSSSYSTST SSSSPSSEEA ASSTAEELAE IVELPSLETS  180
YNELWNEFVY VDPTYPPSSP WYFNNCYSFY YNSDESGTSM AEPFESSNFC PLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1835921573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042601e-170AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608751e-170AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026841e-170CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455063.11e-133PREDICTED: ethylene-responsive transcription factor ERF037
SwissprotO806541e-102ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A3N6RK581e-111A0A3N6RK58_BRACR; Uncharacterized protein
STRINGXP_010471905.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.12e-44ERF family protein