PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC15227_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 395aa    MW: 43126.8 Da    PI: 5.5784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC15227_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31198256259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers+ dp++++itY++eHnh+
  RrC15227_p1 198 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRADPSMLVITYTSEHNHP 256
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-31191258IPR003657WRKY domain
PROSITE profilePS5081132.558192258IPR003657WRKY domain
SuperFamilySSF1182904.05E-26195258IPR003657WRKY domain
SMARTSM007743.4E-38197257IPR003657WRKY domain
PfamPF031066.8E-26199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDNFQGDLTD VVRGIGGHML SPEVSSPPSI LPLPQPSPSD LHINPFGDPF VSMADPLLQE  60
LNAVTNSSHF STARNNSNNG FLVPKVLEHD QIKSQCSIFP RIRISHSNII HESSPCNSPG  120
MSAHVMAAAA SPRGIINVNT NSPRNCLLVD GNTFSSQIQI SSPRNIGLKR RKSQAKKVVC  180
IPAPAAMNSR SSGEVVPSDL WAWRKYGQKP IKGSPFPRGY YRCSSSKGCS ARKQVERSRA  240
DPSMLVITYT SEHNHPWPIQ RNALAGSTRS CSSNPNFSKS PTGTASFDGP QNNTHLPSSA  300
SAVKNEQTED MELENFEDDD DNKIAPYRPE LHDQPDDFFA DLEELEIEGD SLSMLLSQGC  360
AGDPNNETIA FDGITDFFGW SEGNNNKDDQ ESKSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24172258279Disease resistance protein RRS1
5w3x_D1e-24172258279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankAY0526460.0AY052646.1 Arabidopsis thaliana WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490768.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_018490770.10.0PREDICTED: probable WRKY transcription factor 14
RefseqXP_018490771.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A3P6B7880.0A0A3P6B788_BRACM; Uncharacterized protein
STRINGBra026228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]