PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC15085_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 39332.3 Da PI: 6.6493 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 178 | 197 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ RrC15085_p1 178 FSCPLCFKTFNRYNNMQMHM 197 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 262 | 284 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ RrC15085_p1 262 FACRRCGKAFAVKGDWRTHEKNC 284 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 178 | 205 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 178 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 180 | 200 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-6 | 248 | 282 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 249 | 282 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SPNSFYYPST TNPNYMPPTT TTTTSTFPNS 60 PPLREALPLL SSSPIRHQEQ QDQPFFMNTD HTTSSNFHDD PHDVTVDLHL GLPNYEVGGS 120 YIAPETTTTE EQYQDHHQEV EVTVESHLHD DDDHGDLYKG HHYWIPTPAQ ILIGPTQFSC 180 PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA 240 KPLKDFRTLQ THYKRKHGSR PFACRRCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR 300 SLKDHVKAFG NGHVPCGIDS FGGDHEDYYE AASDIEQQDD CNNNE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018488109.1 | 0.0 | PREDICTED: zinc finger protein WIP5-like | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A078HAZ5 | 0.0 | A0A078HAZ5_BRANA; BnaC05g27160D protein | ||||
TrEMBL | A0A3P6EIT8 | 0.0 | A0A3P6EIT8_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bra030450.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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