PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14953_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 339aa    MW: 38755.2 Da    PI: 8.5402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14953_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05182201120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  RrC14953_p1 182 FACSICSKTFTRYNNMQMHM 201
                  78*****************9 PP
2zf-C2H210.90.0014267289123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cgk    k + ++H +++
  RrC14953_p1 267 FSCGKCGKALAVKGDWRTHEKNC 289
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-9161205No hitNo description
SMARTSM003550.17182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596182209IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-6182201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM00355170230262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.38E-5252287No hitNo description
Gene3DG3DSA:3.30.160.608.9E-4253287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190267287IPR015880Zinc finger, C2H2-like
SMARTSM00355180293316IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNLHEKGLTF KSSGFLAWLR ASSNSSSPSV LFPMKMKDVV SRSYHQSQMN IFERSLFLYQ  60
PQEPLNTNTT SIQCLPLLNK LMEDESQASD DIKEEMDDDV VTLQIGLPTY HRGNSVEDDS  120
DTTSEHHQKK SIKRERIEDG LVMMKKRIKM TFEQKMIDDM EVCGKRFWIP SPAQIHVGPM  180
QFACSICSKT FTRYNNMQMH MWGHGSEFRK GADSLKGTTQ PAAILRLPCY CCAEGCKNNI  240
NHPRAKPLKD FRTLQTHYKR KHGSKPFSCG KCGKALAVKG DWRTHEKNCG KLWYCTCGSD  300
FKHKRSLKDH IKSFGHGHSP HPSLSFDGFE EDTECVTTE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432797.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A078G8A70.0A0A078G8A7_BRANA; BnaC08g43240D protein
TrEMBLA0A0D3DYF70.0A0A0D3DYF7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1550.0A0A3P6G155_BRAOL; Uncharacterized protein
STRINGBo8g112550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]