PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1490_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

VOZ

Protein Properties

Length: 268aa MW: 30325.6 Da PI: 9.3843

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1490_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	342.5	2.1e-105	1	173	46	217
VOZ 46 ttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqv 144 ++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+ RrC1490_p2 1 MNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQI 99 79*********************************************************************************************** PP VOZ 145 mkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl.vdekksakgkvskdsladlqkklgrlta 217 m efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelkl vd+kk++kgkvs+ds+adlqk++grlta RrC1490_p2 100 MSEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLvVDGKKNSKGKVSTDSVADLQKQMGRLTA 173 ****************************************7369**********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MNPVVRPGGI GLKDGLLFAA LSAKAGGKDV GIPECEGAAT AKSPWNAPEL FDLTVLESET 60 LREWLFFDKP RRAFESGNRK QRSLPDYNGR GWHESRKQIM SEFGGLKRSY YMDPQPLHHF 120 EWHLYEYEIN KCDACALYRL ELKLVVDGKK NSKGKVSTDS VADLQKQMGR LTAEFPQENV 180 NNKRCIKGRP KVNTKVAAAT NTGNVENTGN FGESILNVQS FERRCLHEKR ALSLRKCLGV 240 FRRDSSEMTK ISFVADEHYH NVCVRMVP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438981.1	1e-150	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_018438989.1	1e-150	PREDICTED: transcription factor VOZ1 isoform X2
Refseq	XP_018440222.1	1e-150	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_018440232.1	1e-150	PREDICTED: transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	1e-133	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A078H000	1e-145	A0A078H000_BRANA; BnaC05g21930D protein
TrEMBL	A0A078H6A9	1e-145	A0A078H6A9_BRANA; BnaA09g27210D protein
TrEMBL	A0A0D3CEB4	1e-145	A0A0D3CEB4_BRAOL; Uncharacterized protein
TrEMBL	A0A397XY60	1e-145	A0A397XY60_BRACM; Uncharacterized protein
TrEMBL	A0A397XZ58	1e-145	A0A397XZ58_BRACM; Uncharacterized protein
TrEMBL	A0A397Y3K1	1e-145	A0A397Y3K1_BRACM; Uncharacterized protein
TrEMBL	A0A397Y6N4	1e-145	A0A397Y6N4_BRACM; Uncharacterized protein
TrEMBL	A0A3N6UDZ9	1e-145	A0A3N6UDZ9_BRACR; Uncharacterized protein
TrEMBL	A0A3P6EHD2	1e-145	A0A3P6EHD2_BRAOL; Uncharacterized protein
STRING	Bra032913.1-P	1e-145	(Brassica rapa)
STRING	Bo5g057050.1	1e-146	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-135	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]