PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14908_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 267aa    MW: 31284.6 Da    PI: 6.0014
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14908_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.64e-33271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F  g+++ll+ ik
   RrC14908_p1  27 FLIKTFEIVEDPSTDHIVSWNRGGTSFVVWDLHSFSTFLLPRHFKHSNFSSFIRQLNTYGFRKIEADR---------WEFANDGFLLGQRQLLKFIK 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
   RrC14908_p1 115 RRAS 118
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3521110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5423116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNPFQLQEGD PPPKPVEGLH EIGPPPFLIK TFEIVEDPST DHIVSWNRGG TSFVVWDLHS  60
FSTFLLPRHF KHSNFSSFIR QLNTYGFRKI EADRWEFAND GFLLGQRQLL KFIKRRASFG  120
SSSPSINDPC TELRREKQLL MMELVCLRQQ QQTTRRYIKA MEQRIEAAER KQRQMMSFLA  180
RAMQSPSFLH QLLKQRDMRL KEIEDEAAER ERCSPMSELE TLALEMQGYG KQKNVKEEED  240
MVVERELDDG FWEELLSNES LASTSSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222511818122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKFIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497111e-48AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026861e-48CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477312.10.0PREDICTED: heat stress transcription factor A-7a isoform X1
RefseqXP_018477314.10.0PREDICTED: heat stress transcription factor A-7a isoform X2
SwissprotQ9SV121e-145HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A397ZIY80.0A0A397ZIY8_BRACM; Uncharacterized protein
STRINGBo4g125760.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-147heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]