PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1486_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 303aa MW: 33635.4 Da PI: 8.3176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1486_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	132	178	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+++ L llP + kK +Ka++Le A++++k+Lq RrC1486_p3 132 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKQLQ 178 5889*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.707	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-16	128	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	132	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-10	132	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.26E-12	133	182	No hit	No description
SMART	SM00353	4.2E-14	134	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MEDSSFTDLM LDTDEYLIDD WESDFPLVPG ETTDHQNPVL GSGSESRFIL IPERPTKQLK 60 VNSTSSSSSS SSSSGSLTTP QVISFGAQVP MMNVAETSFN FSNQANMDQN AGSKRKECGI 120 NGGKREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK ADKASVLEDA IKHLKQLQER 180 VKKLEEERVG TKKMDQSVIL VKRSQVYVED GSSSYSSICS AASPPSSSLD EVSILKQTMP 240 MIEARVSDRD LLIRIHCEKN RGCLVKILSS LEKFRLEVVN SFTLPFGNKS LVITILSKKI 300 SYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	141	ERKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269\|PubMed:12581307, ECO:0000269\|PubMed:15155889, ECO:0000269\|PubMed:15919674, ECO:0000269\|PubMed:18248598, ECO:0000269\|PubMed:18467340, ECO:0000269\|PubMed:18780803}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440234.1	0.0	PREDICTED: transcription factor NAI1-like
Swissprot	Q8S3F1	1e-140	BH020_ARATH; Transcription factor NAI1
TrEMBL	A0A3P5YS25	1e-175	A0A3P5YS25_BRACM; Uncharacterized protein
TrEMBL	M4FFQ3	1e-175	M4FFQ3_BRARP; Uncharacterized protein
STRING	Bra039927.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13607	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	1e-139	bHLH family protein

Publications ? help Back to Top
Hakenjos JP, et al. ML3 is a NEDD8- and ubiquitin-modified protein. Plant Physiol., 2013. 163(1): p. 135-49 [PMID:23903439] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition. Plant Signal Behav, 2015. 10(12): p. e1105418 [PMID:26479492]