PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1479_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 340aa    MW: 38846.2 Da    PI: 8.1027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1479_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05183202120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+k+F+r  n++ H+
  RrC1479_p2 183 FACTICSKTFNRYNNMQMHM 202
                 78*****************9 PP
2zf-C2H210.90.0014268290123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk    k + ++H +++
  RrC1479_p2 268 FSCGKCGKALAVKGDWRTHEKNC 290
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.8E-9162206No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5175206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SMARTSM00355170231263IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-5250288No hitNo description
Gene3DG3DSA:3.30.160.600.001264288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190268288IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSLRNLHEMG LSFESPSFIE WLKAPSSSSS SLLFRIKTKD VVISRSNHQS MLERTMFLYQ  60
PQEPLNTSIR CLPLLNKLME NESQASDDIK EEKDDDDDVV TLQIGLPNYR RGSSVEDDSD  120
TTSDHHQKKP IKREIIDDGV VMMKKRRKTM EFDEEVNDLD MEVCGKRFWI PSPAQIHVGP  180
MQFACTICSK TFNRYNNMQM HMWGHGSEFR KGADSLKGTT QPAAILRLPC YCCAEGCKNN  240
INHPRAKPLK DFRTLQTHYK RKHGSKPFSC GKCGKALAVK GDWRTHEKNC GKLWYCTCGS  300
DFKHKRSLKD HIKSFGDGHS PHPSLSFGGF EEDTECVTTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438239.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A397YV630.0A0A397YV63_BRACM; Uncharacterized protein
STRINGBo5g008880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.10.0WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]