PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14587_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 136aa MW: 15795 Da PI: 10.3834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.3 | 3.9e-46 | 18 | 136 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp+GfrFhP+d+elv++yL k+ ++ + v+ evd++k+ePwd+p++++ + kewyf+s++d+kyatg+r+nrat++gyWkatgkd+++ + +g+ RrC14587_p1 18 LPRGFRFHPRDDELVCDYLMKRNVRSLYQP-VVLIEVDLNKCEPWDIPQTARVGGKEWYFYSQKDRKYATGQRTNRATATGYWKATGKDRAIQR-NGS 113 799****************99866666555.4899*************9889999*************************************99.999 PP NAM 99 lvglkktLvfykgrapkgektdW 121 lvg++ktLvfy+grapkg+ktdW RrC14587_p1 114 LVGMRKTLVFYRGRAPKGRKTDW 136 *********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-47 | 10 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.829 | 18 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-20 | 19 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDAGEENKGS ISMVEAKLPR GFRFHPRDDE LVCDYLMKRN VRSLYQPVVL IEVDLNKCEP 60 WDIPQTARVG GKEWYFYSQK DRKYATGQRT NRATATGYWK ATGKDRAIQR NGSLVGMRKT 120 LVFYRGRAPK GRKTDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-42 | 14 | 136 | 11 | 133 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 2e-73 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 2e-73 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489038.1 | 4e-97 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 8e-74 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A078J914 | 3e-92 | A0A078J914_BRANA; BnaA05g26240D protein | ||||
TrEMBL | A0A3P5Z100 | 3e-92 | A0A3P5Z100_BRACM; Uncharacterized protein | ||||
STRING | Bra034713.1-P | 6e-93 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 4e-93 | NAC family protein |