PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14488_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 386aa MW: 42374.5 Da PI: 7.8874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 187 | 236 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g RrC14488_p2 187 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 236 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 187 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-36 | 187 | 250 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 187 | 244 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-32 | 187 | 245 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-22 | 187 | 245 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-11 | 188 | 199 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.35E-27 | 195 | 246 | No hit | No description |
PRINTS | PR00367 | 5.1E-11 | 210 | 226 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MCTLKVANQE DKVGKKAEFT TREDDHRTLS DIDQWFYLFP AEDNHLHHRD NALTPPSSSS 60 SSLMSSSDRE KEMSAIVSAL THVVAGNVPP HQFVGGGGGG GEGTSNSSSS SGHKRRRDVE 120 EGGGGGKAVK GVNTLTVDQY FSGGNSSSRV REASTNMSGS GPTYEYTTTT NTNTETSSLN 180 ADQPRRRYRG VRQRPWGKWA AEIRDPFKAA RVWLGTFDNA ESAARAYDEA ALRFRGNKAK 240 LNFPENVKLV RPLAATQSLP QPAPVQTITQ LRNSSSTSTL LPIRPAVDSQ PLMQSYNLSY 300 SEMARDHQQF QQHFHQQSVD LYDQMSFPLR FGLTGDSMMQ STSSSSSHSR PLFSPLAVQP 360 GETGYLQDIQ WSPEKKTSND DNSPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 186 | 247 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166741 | 0.0 | AC166741.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence. | |||
GenBank | AC189207 | 0.0 | AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence. | |||
GenBank | AC234756 | 0.0 | AC234756.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH067G23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438486.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 1e-144 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A3P6DW41 | 1e-178 | A0A3P6DW41_BRAOL; Uncharacterized protein | ||||
STRING | Bra031903.1-P | 1e-173 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-120 | ERF family protein |
Publications ? help Back to Top | |||
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