PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC14480_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 419aa MW: 48080.7 Da PI: 7.1327

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC14480_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.7	5.5e-27	80	161	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k++++++ +s +++y++++e RrC14480_p1 80 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGN---RSAKMSYYKEIE 161 ******************************************************************95...566899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-4	70	141	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.979	72	136	IPR017877	Myb-like domain
SMART	SM00717	0.0096	76	138	IPR001005	SANT/Myb domain
CDD	cd12203	1.09E-29	78	143	No hit	No description
Pfam	PF13837	4.0E-20	79	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MFVSDKPRPI DFYKDDNNNT NPSTTARDNM IIDVTTNNTP GDLHPHHHNH HHLQPQQILL 60 GESSGEDHEV KAPKKRAETW VQDETRSLIM FRRGMDGLFN TSKSNKHLWE QISAKMREKG 120 FDRSPTMCTD KWRNLLKEFK KAKHHDRGNR SAKMSYYKEI EEILRDRSKK VTATGQYSKS 180 PNTPPTAKVD SFMQFTDKGF DDPSISFGSV EGTDLIIDFL CNGRPALNLE RRLDHDGHPL 240 AITTVDAVAA NGVPPWNWRE TPGNGKYNNL KPQSGDSHGQ PFGGRIITVK FGDYTRRIGV 300 DGSTEAIKDT IRSAFGLRTR RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDD GLAIRVCHYD 360 ESNQLPVHTE EKIFYTEEDY RDFLARRGWT CLQGDGFRNI DNMDDLQPGA VYRGVRERM

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MFVSDKPRPI DFYKDDNNNT NPSTTARDNM IIDVTTNNTP GDLHPHHHNH HHLQPQQILL  60
GESSGEDHEV KAPKKRAETW VQDETRSLIM FRRGMDGLFN TSKSNKHLWE QISAKMREKG  120
FDRSPTMCTD KWRNLLKEFK KAKHHDRGNR SAKMSYYKEI EEILRDRSKK VTATGQYSKS  180
PNTPPTAKVD SFMQFTDKGF DDPSISFGSV EGTDLIIDFL CNGRPALNLE RRLDHDGHPL  240
AITTVDAVAA NGVPPWNWRE TPGNGKYNNL KPQSGDSHGQ PFGGRIITVK FGDYTRRIGV  300
DGSTEAIKDT IRSAFGLRTR RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDD GLAIRVCHYD  360
ESNQLPVHTE EKIFYTEEDY RDFLARRGWT CLQGDGFRNI DNMDDLQPGA VYRGVRERM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-54	74	159	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433351.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3P5YKC6	0.0	A0A3P5YKC6_BRACM; Uncharacterized protein
TrEMBL	M4EDP3	0.0	M4EDP3_BRARP; Uncharacterized protein
STRING	Bra026903.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]