PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14398_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 165aa MW: 18492.9 Da PI: 5.6408 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.3 | 4.7e-12 | 42 | 68 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p RrC14398_p2 42 PGEPDCSYYIRTGLCRFGSTCRFNHPP 68 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.6 | 8.5e-13 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f+rtG+Ck+G++CkF+H++ RrC14398_p2 95 EVDCAYFLRTGHCKFGATCKFNHPQ 119 578********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 46 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 47 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-6 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 98 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MDLNAGVPMS SLSPLMINQD AMWQMNLSSD ETMELGSYPV RPGEPDCSYY IRTGLCRFGS 60 TCRFNHPPDR DLVIATARMK GEYPERIGQP ECENEVDCAY FLRTGHCKFG ATCKFNHPQP 120 QPTTNLMVPA SGQQQSYSWS RASFIASPRW QDPSGYTPLL MPQGV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117978 | 1e-110 | AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10. | |||
GenBank | BT025966 | 1e-110 | BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118604.1 | 1e-104 | PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1 | ||||
Swissprot | Q8GXX7 | 1e-95 | C3H33_ARATH; Zinc finger CCCH domain-containing protein 33 | ||||
TrEMBL | A0A078IWI8 | 1e-103 | A0A078IWI8_BRANA; BnaAnng12770D protein | ||||
TrEMBL | A0A078JQF5 | 1e-104 | A0A078JQF5_BRANA; BnaCnng56860D protein | ||||
STRING | Bo1g155120.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 6e-98 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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