PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14297_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 239aa    MW: 26337.4 Da    PI: 7.0863
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14297_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.43.9e-18164198135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  RrC14297_p1 164 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 198
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.5E-812238IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.07158194IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-16158208IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15160222No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13161196IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.13E-13163210No hitNo description
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
PfamPF003206.3E-16164198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVYGLSSPD LLRSIDDLLD FSNDEIFSPS STVASSAASS SENPFNFHTS PPPPLPPPSS  60
LLTDFTHDLC VPSDDAAHLE WLSRFVDDSF SSDYPANPLT MTVRPDASFT GKPRNRRSRA  120
QAPPVAGTWA PTPESELCYS VAKRNPSRKL ETESMAADGG GRRCTHCASE KTPQWRTGPL  180
GPKTLCNACG VRFKSGRLVP EYRPASSPTF VLTQHSNSHR KVMELRRQKE ELDSRFLPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487237.11e-142PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-111GATA4_ARATH; GATA transcription factor 4
TrEMBLE4MXE91e-121E4MXE9_EUTHA; GATA transcription factor
TrEMBLV4NDG21e-121V4NDG2_EUTSA; GATA transcription factor
STRINGXP_006402573.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-110GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]