PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC14207_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 127aa MW: 14582.2 Da PI: 6.6614 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.3 | 4.9e-26 | 9 | 69 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ g +fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+++H+++ RrC14207_p1 9 DDNHTWRKYGQKEILGFKFPRAYYRCTHEklyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 69 8***************************99999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.2E-25 | 5 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-24 | 6 | 70 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-31 | 8 | 70 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.141 | 9 | 66 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-23 | 9 | 69 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGNMDTPPDD NHTWRKYGQK EILGFKFPRA YYRCTHEKLY KCPAKKQVQR LDEDPYTFCV 60 TYRSSHTCHF FTTSPISSTA TTDGHYGSTV VNMAEALFGN VDSVLPFGES YFDYRSLFNG 120 SGSDWDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-18 | 9 | 68 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459228.1 | 1e-90 | PREDICTED: WRKY transcription factor 55-like isoform X1 | ||||
Swissprot | Q9SHB5 | 2e-45 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A078J5N8 | 4e-81 | A0A078J5N8_BRANA; BnaC04g55610D protein | ||||
TrEMBL | A0A0D3BXJ1 | 4e-81 | A0A0D3BXJ1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C9D9 | 4e-81 | A0A3P6C9D9_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g114050.1 | 6e-82 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 7e-48 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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