PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 268aa    MW: 30615.1 Da    PI: 4.7046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-1874123255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g
  RrC13_p2  74 KYRGVRQRP-WGKYAAEIRDPST---RTRLWLGTFATAEEAAIGYDRAAIRLKG 123
               8********.**********976...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-3574137IPR001471AP2/ERF domain
PfamPF008474.3E-1174123IPR001471AP2/ERF domain
PROSITE profilePS5103221.89174131IPR001471AP2/ERF domain
CDDcd000185.82E-3174130No hitNo description
SuperFamilySSF541715.36E-2074131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2974130IPR001471AP2/ERF domain
PRINTSPR003674.8E-107586IPR001471AP2/ERF domain
PRINTSPR003674.8E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRSRDRKVKY TVHRKTTPFN VTDPFATDSS SDEENDKLVA PATRVKRYVE EVRIEGATKR  60
EKTVRKATNK APVKYRGVRQ RPWGKYAAEI RDPSTRTRLW LGTFATAEEA AIGYDRAAIR  120
LKGPKALTNF LTPPMIDLET VSGSESARES QSTSMCSPTS VLRFDRNEET EYRTEEPVKL  180
SLTESKEADD ETHASYPFFL SDLFRVGDCL WDSEITTDNL FLDEIQPLPN ITDTISSECP  240
ESFPLSVIGD LSSCWWDVDE FFQDQWLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2175130662ATERF1
3gcc_A1e-2175130662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465208.11e-164PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823399e-97CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY71e-121V4KMY7_EUTSA; Uncharacterized protein
STRINGXP_006397817.11e-121(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.14e-99cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]