PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC13861_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25050.6 Da PI: 8.3939 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.4e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksFs+ L H +H RrC13861_p1 90 YSCSVCDKSFSSYQALGGHKASH 112 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.0009 | 143 | 162 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF++ L H RrC13861_p1 143 HVCSICHKSFPSGQALGGHK 162 79*********988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.7E-8 | 89 | 165 | No hit | No description |
SMART | SM00355 | 0.0089 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.0E-13 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.097 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.8E-13 | 143 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MALEAISSPR LASPVPPLFE ESSRFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLL 60 LLARDGGDRS NRNSLPIPPV TVAEKSSSTY SCSVCDKSFS SYQALGGHKA SHRKNLSQTL 120 SGGGDDLSTS TTSAVTTGSG KSHVCSICHK SFPSGQALGG HKRCHYEGNN NSNNSNVSNS 180 EGAGSTSHVS SGHRGFDLNI PPVPEFSSVN GDDEVMSPMP AKKKPRFDFP EKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435909.1 | 1e-144 | PREDICTED: zinc finger protein ZAT10-like | ||||
Swissprot | Q96289 | 1e-127 | ZAT10_ARATH; Zinc finger protein ZAT10 | ||||
TrEMBL | A0A3P5YG14 | 1e-143 | A0A3P5YG14_BRACM; Uncharacterized protein | ||||
STRING | Bra032845.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-117 | salt tolerance zinc finger |