PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1371_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 646aa    MW: 73386.8 Da    PI: 7.2016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1371_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07437479146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ W+t a  mg  + ++++k+ w+ 
       RrC1371_p3 437 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 479
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.026363434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-4363419IPR009057Homeodomain-like
PROSITE profilePS500904.054366419IPR017877Myb-like domain
PROSITE profilePS500906.876432481IPR017877Myb-like domain
SMARTSM007170.57436483IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-5437479IPR009057Homeodomain-like
SuperFamilySSF466892.84E-7437498IPR009057Homeodomain-like
PfamPF139213.2E-9440498No hitNo description
PROSITE profilePS500906.562482550IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-4486550IPR009057Homeodomain-like
PROSITE profilePS500906.853552605IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MVMSANFFKL DSLDSDTDEE RTTTTASKVA VPSQGTPAER SSVKKKKKKK PSVEKPDSEG  60
GKKSKTKHKK VSGGDGDELG DAESSQGHEK AVANTDADDG KRKRKRVDDT DLGDTLPNPM  120
TTKKKKKQTV ADSENTSSSA NSSKKKSKDK IQRALPEEAQ VNQLQTEDPE KSPKKKRNKK  180
KKETEDPEVE EDNKDSTEDA EKKQSEDSEA DDLNKSSKKK RKKKQIDAPE VEEDNAKANL  240
NKSAKVPKKK KKKQSEAPEV EENHKDSTED AEKENSEAEG NDLDSPEIAK KKKQSEDPEA  300
EVNKEKRKKK KKQKGSKSDE VVTTPSPKTA KKVNFSDQVE VFPAESEESD DEEEEEEKVD  360
LVRGKRFTKE EDELIKKSVL EYVENHALGD EGINMVMNCK AHKQIKGCWK EIATALPWRP  420
YLGVYYRAHT LFEEGSKGVW TKEDLELVVQ HQKKRGNDWR TLADAMGKHR NHVKDAWRRI  480
RLASKKKGHW SMEEYQSLFD LVNRDLRIKA FKEKHSKHGM LRDNIPWMAI SDQLGTRDHA  540
VCCVKWYDQL TSPMVANGMW ANVDDYRLLD ELTNLDAACV DDVDWDNLLD NRDGDACRSR  600
WNQMASSSSN ARLQGLEVGV TFESCKQETH QGLMFESTVE IEKWMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179PKKKRNKK
2176182RNKKKKE
3218222KKRKK
4290311KKKQSEDPEAEVNKEKRKKKKK
5305311KRKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484875.10.0PREDICTED: RNA polymerase I termination factor
TrEMBLM4E9S30.0M4E9S3_BRARP; Uncharacterized protein
STRINGBra025529.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-144MYB_related family protein