PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1338_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27827.4 Da PI: 8.3573 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ +a+ g++Rt+k+c++rw +yl RrC1338_p3 10 KGPWTEQEDILLVNFVHMFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.3e-18 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ RrC1338_p3 63 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.603 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.30E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 27.814 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.40E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKSVQEEYRK GPWTEQEDIL LVNFVHMFGD RRWDFVAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE ERLVLELHAK WGNRWSKIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRHMS 120 PTSSSSNCCS SSMTTAATQD TGGSNGKMDQ ECEDGYYSMD DIWREIDQSG ANIIKPVKDI 180 YYSEQSCYLN FPPLASPAWE SSMESIWNMD ADDSKMSCFA IDQFPLSFEH GRSSPWSSLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519641 | 0.0 | AY519641.1 Arabidopsis thaliana MYB transcription factor (At5g59780) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472596.1 | 0.0 | PREDICTED: transcription factor MYB59 isoform X1 | ||||
Swissprot | Q4JL84 | 1e-155 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A3P6ATB8 | 1e-162 | A0A3P6ATB8_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4CR53 | 1e-162 | M4CR53_BRARP; Uncharacterized protein | ||||
STRING | Bra006694.1-P | 1e-162 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 1e-152 | myb domain protein 59 |
Publications ? help Back to Top | |||
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