PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13346_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 150aa    MW: 16776.1 Da    PI: 6.5076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13346_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1578127154
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                  +++kGVr ++ +g+W AeI+dp     +  +r +lg+f ta++Aa+a++  + kl 
  RrC13346_p1  78 KKHKGVRKKP-SGKWSAEIWDP-----SlqRRRWLGTFPTAKMAAEAYDDEAAKLV 127
                  589****999.7*********9.....445*******************9888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-2179143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1979131IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1479131IPR016177DNA-binding domain
PROSITE profilePS5103218.86179140IPR001471AP2/ERF domain
PRINTSPR003675.5E-68091IPR001471AP2/ERF domain
CDDcd000183.75E-1482114No hitNo description
PRINTSPR003675.5E-6102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MNLLVDDDDD DGLEDRIFVS WPLSVMIPVP RVGSVCKQGP DFVRALHQPL DAGPCPLCSN  60
TGCYGCAFPV HEEIKKEKKH KGVRKKPSGK WSAEIWDPSL QRRRWLGTFP TAKMAAEAYD  120
DEAAKLVKRK AARSDTMNGE EPTIHREDDG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481647.13e-61PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9SK675e-42EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A397KYV14e-57A0A397KYV1_BRACM; Uncharacterized protein
STRINGBra019086.1-P2e-57(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.13e-32ERF family protein