PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC13245_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 39014.2 Da PI: 7.0213 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g + R+ k+c++rw +yl RrC13245_p1 14 KGPWTPEEDIILVTYIQEHGPGNWRAVPTNTGmynlhsswLLRCSKSCRLRWTNYL 69 79****************************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.3e-15 | 75 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ +v++ ++lG++ +W++Ia++++ Rt++++k++w+++l RrC13245_p1 75 RGNFTEHEEKMIVHLQALLGNRefdyfccRWAAIASYLP-QRTDNDIKNYWNTHL 128 89*************************************.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 5 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.846 | 9 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-25 | 11 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-13 | 13 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 14 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-9 | 16 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 73 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 74 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.362 | 74 | 132 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.9E-13 | 75 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.46E-9 | 77 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVRPPCCDKG GVKKGPWTPE EDIILVTYIQ EHGPGNWRAV PTNTGMYNLH SSWLLRCSKS 60 CRLRWTNYLR PGIKRGNFTE HEEKMIVHLQ ALLGNREFDY FCCRWAAIAS YLPQRTDNDI 120 KNYWNTHLKK KLNKANQDSH QELDHSRDRS SLSSSPSSSS ANSNSNISRG QWERRLQTDI 180 QLAKKALSEA LSPAVEPSIN STLATTATAS SSSESRRSTS SACEFLRTQE TTTTYASSTE 240 NIAKLLKGWV KTSRKTQNSA DQRIHPDSET KEVIKSDDVE IDCAEAFQAF SGFDHSKDCG 300 SPDHETKPDI NGCSNQSQLY LFEKWLFEDS GGQIGDILLD ENSNFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-21 | 14 | 132 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the DNA sequence 5'-AACAAAC-3' (PubMed:19170933). Acts as a positive regulator of hypersensitive cell death (PubMed:10571865, PubMed:12119395). Acts as a positive regulator of salicylic acid synthesis (PubMed:16730712). Regulates very-long-chain fatty acid biosynthesis (PubMed:18326828). Acts cooperatively with BZR2 to promote expression of a subset of brassinosteroids target genes (PubMed:19170933). Transcriptional activity and hypersensitive response control negatively regulated by PLA2-ALPHA and by the Xanthomonas type III effector XopD (AC G9L9K6) (PubMed:20696912, PubMed:21917550). Involved in the regulation of abscisic acid (ABA) signaling (PubMed:22814374). Increased levels of MYB30 can accelerate flowering both in long and short days through the regulation of FT (PubMed:24587042). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:12119395, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:18326828, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912, ECO:0000269|PubMed:21917550, ECO:0000269|PubMed:22814374, ECO:0000269|PubMed:24587042}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated during hypersensitive response, but no expression detected during compatible interaction with pathogens (PubMed:10571865). Specifically induced in the inoculated zone 4 hours post pathogen infection (PubMed:20696912). Up-regulated by jasmonic acid and salicylic acid (PubMed:16463103, PubMed:16730712). Transcriptionally regulated by BZR2 (PubMed:19170933). {ECO:0000269|PubMed:10571865, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16730712, ECO:0000269|PubMed:19170933, ECO:0000269|PubMed:20696912}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155348 | 0.0 | AC155348.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436526.1 | 0.0 | PREDICTED: transcription factor MYB30-like | ||||
Swissprot | Q9SCU7 | 1e-174 | MYB30_ARATH; Transcription factor MYB30 | ||||
TrEMBL | A0A0D3E0L5 | 0.0 | A0A0D3E0L5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DY73 | 0.0 | A0A3P6DY73_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g008700.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5842 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-155 | myb domain protein 30 |