PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13210_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 355aa    MW: 40826.5 Da    PI: 5.8714
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13210_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.3e-34141062102
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+ye+++d++ ++++sw+ ++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i
   RrC13210_p2  14 FLIKTYEMVDDSSSNSIVSWNpQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKNI 101
                   9********************9999***************************************99988.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   +r+k 
   RrC13210_p2 102 HRRKP 106
                   **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5810104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.86E-3310104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.2E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2914104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDENNHGGGS LPPFLIKTYE MVDDSSSNSI VSWNPQSNKS FIVWNPPEFS RDLLPRFFKH  60
NNFSSFIRQL NTYGFRKADP EQWEFANDDF VRGQPHLMKN IHRRKPVHSH SSQSLQAQQN  120
SSSDSERKRM ENQIERLVKE KKALVEECYI NKRRNEICLR NKLKNLKISY NTWRSVLEKP  180
DLALNLSPCL PERKRRFPRI GLEGSTSPSS QAREHQVEQL ESSIAIWENL VSDDSCEGMA  240
QETISMMTID VDESSTCPES PPLSCINMSL DTRPRSPPSP RTIDMNSEPD ASKEHNTVTP  300
PPVEVVNDVF WQQLLTENPG STEPKEVQSD DKAENCWWDS RNVNRITEQL GHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-20710413120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466429.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-161HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6BR830.0A0A3P6BR83_BRACM; Uncharacterized protein
STRINGBo3g157380.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-145heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]