PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13123_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 569aa    MW: 62014.1 Da    PI: 5.2743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13123_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.13.2e-22324394259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---....EE........EEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpv....kk........kversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv    +k        +v+r+aed +++++tYeg+Hnh+
  RrC13123_p1 324 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVpaleTKetlanmfsQVQRCAEDRSILITTYEGNHNHP 394
                  7****************************99*97444422344444449*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-27308396IPR003657WRKY domain
SuperFamilySSF1182901.7E-21316396IPR003657WRKY domain
PROSITE profilePS5081123.927318396IPR003657WRKY domain
SMARTSM007747.4E-27323395IPR003657WRKY domain
PfamPF031068.3E-22325394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MFRFPVSLGG SRDETRHDQI TALDERRVVV GEVDFFSDKR DRVSRENIND DQDDEASKVH  60
VKMESSRVED NDRSRDVNVS LVDSLILIGL NLLTANTGSD ESMVDDGLSM DMEDKRAKFE  120
VHINCSNMFC VAMNEMKNSQ LQEELKKMKI ENQSLREMLS QATNNFNSLQ MQLVAVMRQQ  180
EQRNSSQDHL LATEGNAEGR KRQEVQTMVP RQFMDLGPSS GAAEQDAEVS SEERTMLRSG  240
SPPLLLESSN PRESGKRLLG REESPESESN AWGNPNKVSK HNPPSGSNNN NNGNRNLIDQ  300
SAAEATMRKA RVSVRARSEA TMITDGCQWR KYGQKMAKGN PCPRAYYRCT MAGGCPVPAL  360
ETKETLANMF SQVQRCAEDR SILITTYEGN HNHPLPPAAM AMASTTTAAA SMLLSGSMSS  420
QDNLMNPTNL LARAILPCSS SMATISASAP FPTITLDLTN SSNGNNPLMQ FAQRPGFNPA  480
VLPQVVGQGL YYNQQQSKFS GLQLPAQPLQ MAATSSMAES VSAASAAIAS DPNFAAALAA  540
AITSIINGSS HQNNNSNNTN LATSNGDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19310398176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465770.0KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470187.10.0PREDICTED: probable WRKY transcription factor 31
RefseqXP_018470188.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLA0A3P6FUH10.0A0A3P6FUH1_BRAOL; Uncharacterized protein
STRINGBo1g025900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31