PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC13114_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 177aa MW: 19835.2 Da PI: 6.7927

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC13114_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.3e-09	51	91	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++++P a K++ +++L +A+ Y+k L RrC13114_p1 51 ARERRHRISDRLKILQSMVPGgA------KMDTVSMLDEAISYVKFL 91 699***************966......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.919	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-13	47	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-11	48	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.45E-12	48	95	No hit	No description
SMART	SM00353	1.4E-11	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	51	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDQSSIRSLN PNSSSTTSSS SSSFHSHKGR IKGNKNQSVS TLSTDPQSVA ARERRHRISD 60 RLKILQSMVP GGAKMDTVSM LDEAISYVKF LKAQIWFHHN MLLFFNDYET TTPCTYSPAG 120 VSEFEPRLFG CDDDYTPVVE TYSQGMPLLT VADPGNPMWY SSVDDEQKET MHRRGLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240935	0.0	AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469486.1	1e-116	PREDICTED: transcription factor bHLH140
Swissprot	Q9M041	2e-70	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A0D3AHE5	1e-108	A0A0D3AHE5_BRAOL; Uncharacterized protein
STRING	Bo2g001330.1	1e-109	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	8e-68	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]