PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1301_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 267aa    MW: 30473 Da    PI: 6.8797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1301_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.42.6e-2751366127
         NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                  F+P ++el+++yL++k+++++ +  + i+ev+i+++eP dLp  +k e++  wyf s+ +k   + +r++ra k+g Wk tg++ ++++++g+l+glk
  RrC1301_p4   5 TFNPPEDELINYYLNNKITENDDPQGKQINEVNICHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRRKRASKTGHWKITGNSCTIKDTDGNLIGLK 102
                 7*********************999889***************6444444426777777665.56789999**************************** PP

         NAM 104 ktLvfy..........kgrapkgektdWvmheyr 127
                 k Lvf             ++ + +k +W++he++
  RrC1301_p4 103 KFLVFQenknsrsstlLSTTTQQHKFTWIIHEFH 136
                 ******444333332214444455999******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.931155IPR003441NAC domain
PfamPF023651.0E-164136IPR003441NAC domain
SuperFamilySSF1019411.44E-324155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNRYTFNPPE DELINYYLNN KITENDDPQG KQINEVNICH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGKL NRRKRASKTG HWKITGNSCT IKDTDGNLIG LKKFLVFQEN KNSRSSTLLS  120
TTTQQHKFTW IIHEFHSFLR HPNKDAFVLC KLKKKTRSRR GVAVDASPAV IDLSPTIIAD  180
PILNHPQMLT HNKDPVEDYG GDYCNDLEEL IPEIDSCRWL DHSYQFGNNH WGSFADTTHS  240
WEQGESSGFP CGENGHVYGQ DTVGNSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.11e-178PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A3P6F2481e-161A0A3P6F248_BRAOL; Uncharacterized protein
STRINGBo5g002870.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.14e-85NAC domain containing protein 49