PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12923_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 345aa    MW: 38811.1 Da    PI: 9.5214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12923_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19190240256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  RrC12923_p1 190 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAADILRGE 240
                  59******9.**********955...5**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-31189249No hitNo description
PROSITE profilePS5103222.26190247IPR001471AP2/ERF domain
SMARTSM003801.4E-34190253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-31190249IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22190248IPR016177DNA-binding domain
PfamPF008472.5E-12191239IPR001471AP2/ERF domain
PRINTSPR003673.5E-11191202IPR001471AP2/ERF domain
PRINTSPR003673.5E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDQFPKLES SFIHEKLLSS GFYGFLSSST PPQLLGVPII LEGMISPPLP SSQSYFASLH  60
EVTSSVHQQS PVASVPWNFL DSFPRSQRPD DIHHPSKPPN LSLFLKEPKL LELSQSNSNM  120
MPYYNYIPNS LHHESDQTRS EWVDINKALT NYPSKGFGNY WLSTTKTQPM KLASGTRTRK  180
VVQTTTPTKL YRGVRQRHWG KWVAEIRLPR NRTRVWLGTF ETAEQAAMAY DTAADILRGE  240
YAHLNFPDQK HQLKSGPLRC MIASLLDSKI QQISASQVIS PGNSPKVAGT SEPKNNIKTE  300
SGEVVMMKKQ KSNKEVMEGD GVQLSRMPSL DMDLIWDALS LPHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-20189247160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20189247463ATERF1
3gcc_A9e-20189247463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481819.10.0PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ00.0ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLM4EV910.0M4EV91_BRARP; Uncharacterized protein
STRINGBra032724.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.10.0ERF family protein