PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12888_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 351aa    MW: 38319.9 Da    PI: 9.8174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12888_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.5e-33240298159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+ +C+v+k+ver+++d k+v++tYeg+Hnh+
  RrC12888_p1 240 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTVNCTVRKHVERASTDVKAVITTYEGKHNHD 298
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-36225300IPR003657WRKY domain
SuperFamilySSF1182904.18E-29232300IPR003657WRKY domain
PROSITE profilePS5081137.436235300IPR003657WRKY domain
SMARTSM007742.2E-37240299IPR003657WRKY domain
PfamPF031066.0E-25241298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAVEDEVSSM MRTTMLVAPT RPTITVPQRP PAIETAAYFF GGGDGFSLSP GPLSFVSSLF  60
VDNFPDVLTP DNQRTTSFSQ LLAGAMSGSP GSGRSTAGML AAGGSPLFTI PSGFSPSSLL  120
TSPMFFPPQQ SPTQTGFVQP ESQPKRPDSF PNQMPPSTST VVRNHQSCEA SQADHRAISH  180
HNNPANNNNT NRSYNVVNVD KPADDGYNWR KKIGGGMSTT HRSVTEPKII VQTRSEIDLL  240
DDGYRWRKYG QKVVKGNPHP RSYYKCTTVN CTVRKHVERA STDVKAVITT YEGKHNHDVP  300
AARNGTATAG TSDHHRKRLL SGNNMQQHMS FDNTGQSPVL LRLKEEKMTI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-39231301878Probable WRKY transcription factor 4
2lex_A3e-39231301878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488831.11e-148PREDICTED: probable WRKY transcription factor 58 isoform X1
RefseqXP_018488834.11e-148PREDICTED: probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU74e-75WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A397ZI901e-127A0A397ZI90_BRACM; Uncharacterized protein
TrEMBLA0A3P5Z0871e-120A0A3P5Z087_BRACM; Uncharacterized protein
TrEMBLV5RF871e-121V5RF87_BRACM; WRKY transcription factor 58
STRINGBra039147.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-76WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]