PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12757_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 189aa MW: 20830.9 Da PI: 10.1578

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12757_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.9	1.5e-19	88	142	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIr+ + g+r r +lg+f+taeeAa a+++a+ +l g RrC12757_p3 88 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 142 59******.******54433367********************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	9.8E-34	1	170	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	5.47E-25	88	149	No hit	No description
SuperFamily	SSF54171	1.63E-19	89	151	IPR016177	DNA-binding domain
Pfam	PF00847	2.9E-13	89	142	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.549	89	150	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-27	89	150	IPR001471	AP2/ERF domain
SMART	SM00380	7.4E-31	89	156	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	90	101	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.7E-11	116	132	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MKRIVRISVT DAEATDSSSD EETEKPRGAA TTTTTTTRGK RLVKEIVIDE DSNKLDACCS 60 SSKTRFKIRI PAEFLKATAK TTTAEGKKKF RGVRQRPWGK WAAEIRCGRA LKGRRDRLWL 120 GTFDTAEEAA LAYDNAAVQL IGPHAPTNFS FPAESSRQEL LESREVGGCL FVKLAMKGVS 180 VYLSIVMGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	89	149	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189401	3e-60	AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452899.1	1e-104	PREDICTED: ethylene-responsive transcription factor ERF070-like isoform X1
Swissprot	Q9C995	1e-70	ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBL	A0A0D3APU1	1e-81	A0A0D3APU1_BRAOL; Uncharacterized protein
STRING	Bo2g070850.1	2e-82	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4000	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71130.1	1e-44	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]