PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC126_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 274aa    MW: 31364 Da    PI: 9.5004
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC126_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35211112101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+++++ed++++++isw+e+g+sfvv+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+++ll++i+
     RrC126_p8  21 FLIKTFNLVEDHSIDDVISWNEDGSSFVVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDFFRRGERRLLREIQ 108
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     RrC126_p8 109 RRK 111
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.5E-5517110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.31E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVSDNGDAMI VESQRSVPTP FLIKTFNLVE DHSIDDVISW NEDGSSFVVW NPTDFARDLL  60
PKHFKHNNFS SFVRQLNTYG FKKVVPDRWE FSNDFFRRGE RRLLREIQRR KLTPQAAFRR  120
RKRSSPSSSA EDQAVSPLWN YQTGNGGGLS VELLEENEKL RSQNIQLNRE LAQMKSLCDN  180
IFSLMSNYSG SPSDENRSSP GASTSRERMK AVEFFPGKTE AAEEEASHRL FGVSIGLKRT  240
RSEGVQVKAV VGERSGEKEE TPWLRHCNRT NQRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-221611025129Heat shock factor protein 1
5d5v_B9e-221611025129Heat shock factor protein 1
5d5v_D9e-221611025129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108120RRKLTPQAAFRRR
2108122RRKLTPQAAFRRRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491254.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW41e-125HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A397YZ921e-160A0A397YZ92_BRACM; Uncharacterized protein
STRINGBra010049.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-112heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]