PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12625_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 124aa MW: 14410.3 Da PI: 5.6921 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.7 | 7.1e-11 | 103 | 124 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYG+K+++gs+fpr RrC12625_p1 103 LDDGYKWRKYGKKPIRGSPFPR 124 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-9 | 93 | 124 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.15 | 98 | 124 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-8 | 101 | 124 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-6 | 104 | 124 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MNYPSNPNPS FIDFPETFAS DDYDDAFQMI MEQISLEDHS PTLSWNSCEK LLATEITSPL 60 QTNLVTSPMS LEIEDKTEIK KRKRHKDDQI IHVFKTKSIE VALDDGYKWR KYGKKPIRGS 120 PFPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430066 | 1e-156 | KF430066.1 Brassica rapa WRKY transcription factor 59 (WRKY59) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482206.1 | 3e-88 | PREDICTED: probable WRKY transcription factor 59 | ||||
Swissprot | Q9SJ09 | 2e-44 | WRK59_ARATH; Probable WRKY transcription factor 59 | ||||
TrEMBL | A0A078FSM5 | 2e-75 | A0A078FSM5_BRANA; BnaA04g12540D protein | ||||
TrEMBL | M4ENA3 | 2e-75 | M4ENA3_BRARP; Uncharacterized protein | ||||
TrEMBL | V5RF01 | 2e-75 | V5RF01_BRACM; WRKY transcription factor 59 | ||||
STRING | Bra030273.1-P | 3e-76 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13835 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21900.1 | 1e-46 | WRKY DNA-binding protein 59 |