PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1248_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 469aa    MW: 51796.4 Da    PI: 6.0013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1248_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000567698123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C  Cgk+F++   L  H r H
  RrC1248_p1 76 HVCCECGKRFKSGKALGGHKRIH 98
                79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.86E-672102No hitNo description
Gene3DG3DSA:3.30.160.605.3E-57298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-77698IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15776103IPR007087Zinc finger, C2H2
SMARTSM003550.157698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM003552.9133155IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954133155IPR007087Zinc finger, C2H2
PfamPF139120.0056135156IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-7314337No hitNo description
PfamPF139124.5E-10315339IPR007087Zinc finger, C2H2
SMARTSM003550.55315337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411315342IPR007087Zinc finger, C2H2
PROSITE patternPS000280317337IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-7379406No hitNo description
PfamPF139121.6E-11384407IPR007087Zinc finger, C2H2
SMARTSM003550.24384406IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328384406IPR007087Zinc finger, C2H2
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDQLRGYKPN CRFSLGRPRF GSIKFKLPNS SSQPFISEQR REIEEEDEGA KSIGFREEDE  60
DDGAKSIDLE GEEKKHVCCE CGKRFKSGKA LGGHKRIHVV ETRKFLMARP KMVSSGAVAV  120
GRSETSERDD FEVDCCVCHK KFTSMKALYG HMRFHPDRGW KGVLPPHHPL GDDHDGEFIT  180
SDYDNDDDDY EDDDDENSEL WDNHWGLDNV VDLKDSIKEG WAVTGKRGRR SAFKDPPSED  240
IDAKDLLFLA TTAEAVDLDA AETCDSRSVE EMMKRRRKKK KRLSEMEKES SSSHDHHQLE  300
VGDAAEGGGG AREKHVCVTC NKSFASYQAL GGHRASHNKV KISEIHQARA NGEALLLGTE  360
AMVTGLASAQ GPNTSLSISN KGDHVCNICQ RSFSTGQALG GHKRCHWPGP ASNEAATAPG  420
PVSSEAATAA PTAPEAGSSS QVVETVQEVK RLKRKFLEFD LNELPPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272279MKRRRKKK
2273281KRRRKKKKR
3275281RRKKKKR
4276281RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455488.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A078FXC90.0A0A078FXC9_BRANA; BnaA10g10360D protein
STRINGBo9g123640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-146C2H2 family protein