PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12471_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 293aa    MW: 32767.8 Da    PI: 4.9196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12471_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-1694144256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr ++ +g+++AeIr ps    rk+++lg+f taeeAa a+ +a+ +l+g+
  RrC12471_p1  94 KYRGVRKRP-WGKFAAEIRNPSA---RKKIWLGTFATAEEAAFAYNEAAIQLKGH 144
                  8********.**********953...4************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.69E-1794149No hitNo description
PfamPF008472.0E-1094144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2694150IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1994150IPR016177DNA-binding domain
PROSITE profilePS5103220.82494151IPR001471AP2/ERF domain
SMARTSM003803.4E-3094157IPR001471AP2/ERF domain
PRINTSPR003677.3E-1095106IPR001471AP2/ERF domain
PRINTSPR003677.3E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESRQRKVKY TIHRKVTSNP FNCFPKVVKI SVTDTCATDS SSDEEENDNK ARKLKRYVEE  60
IRFCDRNEKP ARKGKNKVVV AVEDYGGESV KPVKYRGVRK RPWGKFAAEI RNPSARKKIW  120
LGTFATAEEA AFAYNEAAIQ LKGHNAQTNL LTPPPVVAVP ETPVTVRVSG SDLVGESQTG  180
SICSPASVLP YNNLNDETDF RTEPIKVEPM TTVDEESLVP GPFFLPDLFN GDCFWDPKFS  240
SDHLFLDEIE PLPNKDLISD KNSSLSLIGD FSSILWDVDG LWDVDETQAS GDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1795150359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397817.11e-102ethylene-responsive transcription factor CRF5
SwissprotO823391e-91CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY71e-101V4KMY7_EUTSA; Uncharacterized protein
STRINGBostr.25993s0138.1.p1e-102(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.15e-75cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]