PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12447_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 296aa    MW: 33846.6 Da    PI: 6.6717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12447_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ykC  C ksF +   L  H+r+H
  RrC12447_p1  4 YKCRLCFKSFINGRALGGHMRSH 26
                 9*********************9 PP
2zf-C2H216.13.2e-05174196123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ Cgk+F++   L  H  +H
  RrC12447_p1 174 FKCETCGKVFKTYQALGGHRASH 196
                  89************999999888 PP
3zf-C2H212.70.00039221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F++   L  H r+H
  RrC12447_p1 221 HQCPICFRVFTSGQALGGHKRSH 243
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.84E-10326No hitNo description
PfamPF139122.5E-4326IPR007087Zinc finger, C2H2
SMARTSM003550.056426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.84E-10169196No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4170200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-11173198IPR007087Zinc finger, C2H2
SMARTSM003550.014174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576674.47E-5218246No hitNo description
PfamPF139121.7E-10220243IPR007087Zinc finger, C2H2
SMARTSM003550.08221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MERYKCRLCF KSFINGRALG GHMRSHILTL PSKRELYELT APPSQLSEET ESDASSSSDE  60
EEDDVNCGEF ESETKSSRMN PTRKRSKRTR KLGSFDFEFK KVRTSQPGEA VTELEHHSSA  120
SDTTTEEDLA FCLIMLSRDK WKQQKNKTIV VEEEDDDECE DYKSSKNSGG RRRFKCETCG  180
KVFKTYQALG GHRASHKKNK TFTTMTSTKT EHEKTEYEKV HQCPICFRVF TSGQALGGHK  240
RSHGSNNIGS RRELSVNQSV PSVKEEEEVE VKQMMIDLNL PAPNEDNETS VVFNEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474803.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-114ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLM4C8441e-153M4C844_BRARP; Uncharacterized protein
STRINGBra000372.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-96C2H2-like zinc finger protein