PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1239_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 537aa    MW: 58269.2 Da    PI: 9.7984
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1239_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.74.3e-1248108262
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 ++ ++  r+++NRe+A+ sRqRKk ++eeLeekv  + +  ++L  +++    e a+l+++
  RrC1239_p1  48 EDERKRARLIRNRESAQLSRQRKKHYVEELEEKVRHMHSTITDLNGKISFFMAENAALRQQ 108
                 55566779*******************************9999999999999999888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-1747111IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.10549109IPR004827Basic-leucine zipper domain
PfamPF001708.3E-1150109IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-1251109No hitNo description
Gene3DG3DSA:1.20.5.1707.1E-1751109No hitNo description
CDDcd147041.38E-1952103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSIKVEETAA TTKRKKEDTS ESDESRSSKY RRSGEQESAV TVEEEGEEDE RKRARLIRNR  60
ESAQLSRQRK KHYVEELEEK VRHMHSTITD LNGKISFFMA ENAALRQQLG GSGMMCPPPP  120
PPPPPMGMYP PMGYQWMPCP PPYMLKQQGS QVPLVPIPRL KPQSALGSSK GKSKKSETKT  180
KKVASISFLG LLFCLFLFGA LAPVMNVSYG GISGAFYGNY RSNYVTDQIY SHRRSRVLET  240
SGSGAGSGGF NGNGMHCGRD SNISATESSV PPGNGSEPLV ASLFVPRNDK LVKIDGNLII  300
NSILASEKAV VASRKASESN ERKADPLISK DYPPALPLPG VGKIEDMAKH LYRSKAEKQK  360
ALSSGSDDTL KEKIKTKAAS GEMQQWFREG VAGPMFSSGM CTEVFQFDVS STSGAIIPAS  420
PAANVSSEHS NNATDTHMRK NRRTLRGLAI PLPGSDFNFT KEHQRNSSSK EIKPASSMVV  480
SVLVDPREGG DGGDIDGMIG GPKSLSRVFV VVLVDSAKYV TYSCVLPRSG APHLVTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269|PubMed:17662035, ECO:0000269|PubMed:20876872}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439934.10.0PREDICTED: bZIP transcription factor 17-like
SwissprotO222080.0BZP17_ARATH; bZIP transcription factor 17
TrEMBLA0A3P6BRE10.0A0A3P6BRE1_BRAOL; Uncharacterized protein
STRINGBo4g012880.10.0(Brassica oleracea)
STRINGXP_006411360.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88812737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.10.0bZIP family protein
Publications ? help Back to Top
  1. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]
  2. Sagor GH, et al.
    The polyamine spermine induces the unfolded protein response via the MAPK cascade in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 687
    [PMID:26442007]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Kim JS,Yamaguchi-Shinozaki K,Shinozaki K
    ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation.
    Plant Physiol., 2018. 176(3): p. 2221-2230
    [PMID:29367234]
  5. Cifuentes-Esquivel N, et al.
    bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress.
    J. Cell. Biochem., 2018. 119(8): p. 6857-6868
    [PMID:29693271]
  6. Guan P, et al.
    SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance.
    Plant Physiol., 2018. 178(3): p. 1390-1405
    [PMID:30287478]