PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12265_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27231.5 Da PI: 8.9028 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 1.9e-15 | 20 | 60 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +g+WT+eEd ll+d+v+++G g+W+++a+ g++R +k+c+ RrC12265_p1 20 KGPWTAEEDRLLIDYVRLHGEGRWNSVAKLAGLKRNGKSCR 60 79******************************99******8 PP | |||||||
2 | Myb_DNA-binding | 29.5 | 1.7e-09 | 60 | 83 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIar ++ gRt++++k++w+++ RrC12265_p1 60 RWSTIARSLP-GRTDNEIKNYWRTH 83 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.658 | 15 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-17 | 17 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-18 | 19 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-15 | 19 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 20 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.99E-13 | 22 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-11 | 61 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSLWGVMGAG WGTVEEGWRK GPWTAEEDRL LIDYVRLHGE GRWNSVAKLA GLKRNGKSCR 60 WSTIARSLPG RTDNEIKNYW RTHFKKKTKS PTNNAEKTKN RILKRQQFQQ QRQMELQQEQ 120 QLLQLNQIDM KKIMSLLEED NNHNNGDNNF SSSSSGSSGE GGAFYVPHQI THSTTNSGYD 180 SNGNGLFRVV PMPLPEANLH EEYAIWDGLW NLDLEGQGSF SGGACVPRKP CFQNLTIPFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189491 | 1e-154 | AC189491.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084M06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437646.1 | 1e-132 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | M4EHV4 | 1e-128 | M4EHV4_BRARP; Uncharacterized protein | ||||
STRING | Bra028369.1-P | 1e-129 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 6e-97 | myb domain protein 305 |