PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC12162_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 151aa MW: 17195.5 Da PI: 9.1187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC12162_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.5e-11	29	77	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq RrC12162_p1 29 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 77 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.64E-18	24	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.45E-10	24	81	No hit	No description
PROSITE profile	PS50888	15.485	26	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-17	27	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-8	29	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MNKESSQSEE TPPKENYIHM RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT 60 GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNVDIDR ILAKDLLQPR DRNTPTLGLN 120 PFTGFQGTMP NISTTTTPQY NSLPQANNTR E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	1e-140	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	AK229309	1e-140	AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBank	BT012655	1e-140	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441068.1	3e-96	PREDICTED: transcription factor bHLH74-like isoform X1
Refseq	XP_018441078.1	3e-96	PREDICTED: transcription factor bHLH74-like isoform X2
Swissprot	Q6NKN9	4e-92	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A078JFB9	3e-93	A0A078JFB9_BRANA; BnaC05g07820D protein
STRING	Cagra.4395s0200.1.p	2e-93	(Capsella grandiflora)
STRING	XP_006305146.1	2e-93	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-94	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]