PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12150_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 271aa    MW: 29966 Da    PI: 9.2103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12150_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00186786221
                 EETTTTEEESSHHHHHHHHH CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                 +C+ Cgk+F ++  L  H+r
  RrC12150_p2 67 PCTECGKTFWSPKALFGHMR 86
                 5******************8 PP
2zf-C2H210.80.0015156178123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F ++  L  H  +H
  RrC12150_p2 156 FECGGCKKVFGSHQALGGHRASH 178
                  89************999999888 PP
3zf-C2H2130.00031207229123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C +++s+   L+ H+r H
  RrC12150_p2 207 HKCNICYRVYSSGQALRGHMRFH 229
                  79*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0156688IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-76690IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1186693IPR007087Zinc finger, C2H2
SuperFamilySSF576678.06E-96788No hitNo description
Gene3DG3DSA:3.30.160.602.5E-46888IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576678.06E-9151178No hitNo description
PfamPF139121.1E-7155179IPR007087Zinc finger, C2H2
SMARTSM003553156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-6204233No hitNo description
PfamPF139122.1E-8206230IPR007087Zinc finger, C2H2
SMARTSM003550.08207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MIHNQLPLAS NAIIPIFPNP NLQIALSPSY HQSPRKKRTK TVALPSSSSP NRIHQRPDSN  60
APKITRPCTE CGKTFWSPKA LFGHMRCHPE RQWRGINPPP NHRGRLTPAA LSSNHLNQRS  120
PNLVSLMSEE DYEVASYLLM LSEAAPLSSS TSGERFECGG CKKVFGSHQA LGGHRASHKN  180
VKGCFAIRNV NVTGGPVTVT SNQDEHHKCN ICYRVYSSGQ ALRGHMRFHC WEREDETMFV  240
GALDLNVPVT THDLSTSVDI SGCSLDLRLG L
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896561e-158AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452607.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-115ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3P6FJY41e-151A0A3P6FJY4_BRAOL; Uncharacterized protein
STRINGBo1g006590.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-114C2H2-like zinc finger protein