PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11548_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 570aa    MW: 65286.6 Da    PI: 8.1213
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11548_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.5e-3042126187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++ e+laL+++r+em++++r++ lk+plWee+s+km e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
  RrC11548_p1  42 RWPRPETLALLRIRSEMDKSFRDSTLKAPLWEEISRKMLELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 126
                  8********************************************************************975544..6******985 PP
2trihelix108.83.4e-34392477187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  RrC11548_p1 392 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 477
                  8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.007439101IPR001005SANT/Myb domain
CDDcd122031.60E-2441106No hitNo description
PROSITE profilePS500907.0154199IPR017877Myb-like domain
PfamPF138376.3E-2041126No hitNo description
SMARTSM007179.2E-4389451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-4391448IPR009057Homeodomain-like
CDDcd122031.99E-25391456No hitNo description
PROSITE profilePS500907.491391449IPR017877Myb-like domain
PfamPF138377.0E-24391478No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSGNSLGLLD SSGGGVGGSA EEEKDMKMEE TNEVGGGGGG SRWPRPETLA LLRIRSEMDK  60
SFRDSTLKAP LWEEISRKML ELGYKRSAKK CKEKFENVYK YHKRTKEGRT GKSEGKTYRF  120
FEELEAFESQ PAKSPAATTT TTATTSLIPW ISSNTPSTEK TSSPLKHHHH HHQVSVKPIA  180
TNPTFPTKQP SSTTPFPFYS NNHTTTLDTG HKPTSNDLVN NVSSLNLFSS STSSSTASDE  240
EEDQEKRSRK KRKYWKGLFT KLTKELMEKQ EKMQKRFLES LENREKERIS REEAWRVQEV  300
ARINREHETL VNERSNAAAK DAAIISFLHK ISGGQQQQQP QQQPQQNHKV PQRKQYQSEQ  360
HSITFESKEP RPVLLETTMK MGNHSLSPSS SRWPKTEVEA LIRIRKNLEA NYQENGTKGP  420
LWEEISAGMR RLGYNRSAKR CKEKWENINK YFKKVKESNK KRPLDSKTCP YFHQLEALYN  480
ERNRSGALPM LPLMVTPQRQ LLLPQETQTE FETDHRDRAG NKEGEEEGES EEDDYEDEEE  540
EGEGDNETSE FEIGLNKTSS PMDINNNLFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446613.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3P6BUA40.0A0A3P6BUA4_BRACM; Uncharacterized protein
STRINGBra015715.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein