PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11501_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 346aa    MW: 39333.5 Da    PI: 8.1803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11501_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.6e-07179201123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++Cgk F+r  nL+ H+r H
  RrC11501_p1 179 HYCQICGKGFKRDANLRMHMRAH 201
                  68*******************99 PP
2zf-C2H210.70.0017268291123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y C++C+ k+Fs  s+L++H + +
  RrC11501_p1 268 YMCKKCNvKHFSVLSDLRTHEKHC 291
                  89******************9876 PP
3zf-C2H212.20.00058300315621
                  TTEEESSHHHHHHHHH CS
      zf-C2H2   6 CgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L++H +
  RrC11501_p1 300 CGTRFSRKDKLMSHVS 315
                  **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.21E-6177204No hitNo description
PROSITE profilePS5015712.632179206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-6179206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028179201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SMARTSM00355160230263IPR015880Zinc finger, C2H2-like
SMARTSM0035527268290IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MTAATKSSED EDDVSLSLLL NLSTMQDKVH QIKSLVSFFM ISTNNNNQST ESTSSLAVAN  60
IGSLVQDIIT TGTSMMFTCQ QLQISSNNNS NFDNDTIVME FPPQEIDRNH EFMRESSTNL  120
LGVQERGSSS FIDQTTQNLD WFGTQTLNPK KKNPRYKSIS GDYELVELGV ADLLAKYTHY  180
CQICGKGFKR DANLRMHMRA HGDEYKTREA LISPTSLDKE VESSSTRHYY SCPQQGCRWN  240
QRHEKFQPLK SVICAKNHYK RSHCPKMYMC KKCNVKHFSV LSDLRTHEKH CGDIKWLCSC  300
GTRFSRKDKL MSHVSLFLGH SPAHGPPPHQ PPMNTLKSNI TAEVEF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052431e-152AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277401e-152AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankBT0048101e-152BT004810.1 Arabidopsis thaliana At5g22890 gene, complete cds.
GenBankCP0026881e-152CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469323.10.0PREDICTED: zinc finger protein STAR3-like
SwissprotQ0WT241e-179STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3N6QNZ70.0A0A3N6QNZ7_BRACR; Uncharacterized protein
STRINGBo2g024530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-156C2H2 family protein