PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11228_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 392aa    MW: 44792.6 Da    PI: 4.9141
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11228_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34171082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
   RrC11228_p1  17 FLTKTYEMVDDSSSDSIVSWSQSNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEK---------WEFANDDFVRGQPHLMKNIH 104
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   RrC11228_p1 105 RRKP 108
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-379101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.35E-3512106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-6213106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDESNHGGSS SSSLPPFLTK TYEMVDDSSS DSIVSWSQSN RSFIVWNPPE FSRDLLPRFF  60
KHNNFSSFIR QLNTYGFRKA DPEKWEFAND DFVRGQPHLM KNIHRRKPVH SHSQPNLQAQ  120
QNPLTDSERQ RMSSQIERLT KEKEGLLQKL HKQEQEREVF EQQVKKLKDQ LQHMEKRQKT  180
MDSYVSQVVE TPELALNLSP CLPETNERKR RLPGIGFEQD NQTCVVVREE GSTSHSDETE  240
HQVEELESSI AVWESLVSDD SCEGMAQSTR SLMTLDVDDS STCPESPPLS CVQLSIDTCP  300
KSPPCQKIVD MNSEPDHVSK EQNTVAPTPP APASGVNDVF WQQLLTENPD SAKQREVQPE  360
RKEDKGEDPS EKCWWNSRNV NAITEQLGHL TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24710619129Heat shock factor protein 1
5d5v_B9e-24710619129Heat shock factor protein 1
5d5v_D9e-24710619129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454586.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A398ARZ90.0A0A398ARZ9_BRACM; Uncharacterized protein
STRINGBo1g020010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]