PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11020_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 177aa    MW: 19410.4 Da    PI: 6.0138
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11020_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.65.7e-133876543
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43
                 ++ +rkq+NRe+ArrsR RK++ ++ L+  v+ L +eN 
  RrC11020_p1 38 RKRKRKQSNRESARRSRMRKQQHLDDLAAQVAHLRKENG 76
                 5789**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.0E-113378No hitNo description
SMARTSM003389.2E-183498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5883699IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-113891No hitNo description
PfamPF001703.7E-103877IPR004827Basic-leucine zipper domain
CDDcd147021.24E-213989No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNKTELGSST SNSSVSTTGL QNSGSESDLR QRDLLDERKR KRKQSNRESA RRSRMRKQQH  60
LDDLAAQVAH LRKENGHIVA GIAVTTEHYV TIEAENSILR AQLLELNHRL DSLNEIVDFV  120
ESSSFEMETG QGGGLIDYSG PSGGGGFYDG LMNTLNLGFY NQPIMASAST AGDVFNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RKRKRK
25057RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442139.11e-123PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L51e-97BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A3P6H3652e-99A0A3P6H365_BRAOL; Uncharacterized protein
STRINGBra003755.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-67basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]