PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1089_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 466aa    MW: 53915 Da    PI: 4.6186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1089_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038437456221
                 EETTTTEEESSHHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                 kC+ Cg+ F ++  L +Hi 
  RrC1089_p1 437 KCGRCGEKFESRTKLFKHIA 456
                 7*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.62E-13198248No hitNo description
SMARTSM004512.3E-5206240IPR003604Zinc finger, U1-type
SMARTSM003553.2209233IPR015880Zinc finger, C2H2-like
PfamPF121711.1E-10209234IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280211233IPR007087Zinc finger, C2H2
SMARTSM003553436460IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349436465IPR007087Zinc finger, C2H2
PROSITE patternPS000280438460IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSGGTVPDLL PFFSTKVYSG YSDTWKGFYK VYSDVFNKVY LNEVNFARKL GLKMDSVREA  60
PAMGSLESPY AQAKEFYSYW LGFRTVVDFC WVDEFDVMAE PDRGIRRKLK EEIDKVRKKA  120
KREYNERVRS LAAFVKKLDK RMVDMMVMKR IEMEVKKVEE RERKEKMDKE RLERVMNYEE  180
PDLGEDGRFS VVEEDDSDDK DDDDGGMVLY CIVCSKNFKT EKQWKNHEQS KKHKEIVAEL  240
RVEVPEAETV EELQEKIQDG FNMDDDEAEE KDVEEEVEGE ADETDDEYIM AEEDVKKGSS  300
ESEDEDADDG EMSLLEKMVS EQKNKLKNVV SRKDDEVVVE KERTKQNAGD AYKAELNTDD  360
NVKDEADSME YDNRKSTGKR RRSKKGKDKN NLGGLMEKSS EADGTQDRTG DMEESHAEKS  420
TIGMTSEGTS KKAFYNKCGR CGEKFESRTK LFKHIADTDH ATVKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105118RRKLKEEIDKVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681551.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-165JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0D3CWQ00.0A0A0D3CWQ0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6HAN70.0A0A3P6HAN7_BRAOL; Uncharacterized protein
STRINGBo6g087130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-122DNAJ heat shock N-terminal domain-containing protein