PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1082_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TALE | ||||||||
Protein Properties | Length: 252aa MW: 28867.7 Da PI: 6.4236 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.8e-08 | 201 | 234 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + RrC1082_p4 201 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 234 579*****************************87 PP | |||||||
2 | ELK | 27.6 | 6.9e-10 | 155 | 176 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ RrC1082_p4 155 ELKHELKQGFKEKIVDIREEIM 176 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.9E-6 | 1 | 34 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-10 | 2 | 33 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-25 | 41 | 96 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.7E-19 | 46 | 95 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.446 | 155 | 175 | IPR005539 | ELK domain |
SMART | SM01188 | 6.2E-4 | 155 | 176 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.7E-6 | 155 | 176 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.034 | 175 | 238 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-10 | 177 | 242 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-16 | 177 | 242 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.57E-12 | 178 | 234 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 182 | 240 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 195 | 234 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MFEQLLAAHV ACLRVATPVD QIPRIDAQLG ELHTIAAKYS TLGVDVDNKE LDHFMSHYVV 60 LLCSFKEQLQ HHVCVHAMEA ITACWEIEQS LQSVTGVSPS ESNGKTMSDD EDDNQVESEV 120 NMFDGSLDGS DCMMGFGPLV PTERERSLLE RVKKELKHEL KQGFKEKIVD IREEIMRKRR 180 AGKLPGDTTS ILKEWWQTHA KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWNNNS 240 STSSTLSKNK RK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352580 | 0.0 | AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467864.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 1e-176 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A0D3A2Q0 | 1e-174 | A0A0D3A2Q0_BRAOL; Uncharacterized protein | ||||
TrEMBL | U6JT45 | 1e-174 | U6JT45_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g010750.1 | 1e-175 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 1e-169 | KNOTTED1-like homeobox gene 5 |