PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10525_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 256aa    MW: 28207.7 Da    PI: 9.0855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10525_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19131181255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  RrC10525_p1 131 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAAFAYDRAAFRMRG 181
                  8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-32130189IPR001471AP2/ERF domain
CDDcd000181.75E-30130189No hitNo description
PfamPF008471.3E-12131181IPR001471AP2/ERF domain
PROSITE profilePS5103224.171131189IPR001471AP2/ERF domain
SMARTSM003807.4E-40131195IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23131191IPR016177DNA-binding domain
PRINTSPR003679.0E-11132143IPR001471AP2/ERF domain
PRINTSPR003679.0E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAAESDYILL ESIRRHLLGE SDSWLSESTA SSVAQSGTTV KPVYGRNPSF SKLHPCFTEG  60
WGDLPLKEND SEDMLVYGIL NDAFHGGWEP SSSSSDEERS SCPVVKVEKV DYVPAKKKTS  120
PVKAAAEKGK HYRGVRQRPW GKFAAEIRDP AKNGARVWLG TFETAEDAAF AYDRAAFRMR  180
GSRALLNFPL RVNSGEPDPV RVKSKRGSSS SSESGALKRR RTVASANVVG QETDTGLIKV  240
KCEVVEVRRD DHLFVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-43128196270ATERF1
3gcc_A2e-43128196270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450313.11e-166PREDICTED: ethylene-responsive transcription factor 1A-like
SwissprotO803371e-125EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLM4DX021e-146M4DX02_BRARP; Uncharacterized protein
STRINGBra021048.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-107ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]